species:   Scscl
pid:       PID1753
parent:    Ssc-milR-229
paralog:   
locus:     NW_001820820.1:1014181-1014243
matures:   ['UGGGGAGGAUCCAGUUGGU', 'CAGAGGAAACGACACCAGU']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820820.1:1014181-1014243

4 out of bounds
7 alignments
2 proper strand
1 stranded perfect matches

*******************                      ********************* 
CAGAGGAAACGACACCAGUUCCGAGAGGAGCAGAGAUGGAGUAUGGGGAGGAUCCAGUUGGUG
(((.(((..(..(.((((((((....)))))............))))..)..)))..)))...
-------------------------------------------UGGGGAGGAUCCAGUUGGU- l=19 a=0 c
CAGAGGAAACGACACCAGU-------------------------------------------- l=19 a=0 c*
------------------UUCCGAGAGGAGCAGAGAU-------------------------- l=19 a=1 ma
CAGAGGAAACGACACCAGU-------------------------------------------- l=19 a=0 ma*

-------------------------AGGAGCAGAGAUGGAGa--------------------- l=17 a=1 
------------------UUCCGAGAGGAGCAGAGAU-------------------------- l=19 a=1 (ma)

mb-00010
ax-1001001
ku-01
ss-100010001000
fn-101
